From 33ed39e9e82d4f8e4af27f2f0d0676977d367137 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Fri, 3 Jul 2020 21:24:00 +0000
Subject: Add upload.cwl

---
 scripts/upload.cwl | 13 +++++++++++++
 1 file changed, 13 insertions(+)
 create mode 100644 scripts/upload.cwl

diff --git a/scripts/upload.cwl b/scripts/upload.cwl
new file mode 100644
index 0000000..0fed09a
--- /dev/null
+++ b/scripts/upload.cwl
@@ -0,0 +1,13 @@
+cwlVersion: v1.1
+class: CommandLineTool
+inputs:
+  fasta: File
+  metadata: File
+outputs: []
+requirements:
+  DockerRequirement:
+    dockerPull: bh20-seq-uploader/import
+  NetworkAccess:
+    networkAccess: true
+baseCommand: bh20-seq-uploader
+arguments: [--skip-qc, $(inputs.metadata), $(inputs.fasta)]
-- 
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