From 19c8d1390707c59f6acc26d23c78d462e4085a7b Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Sat, 22 Aug 2020 16:39:51 +0200 Subject: lots of new dictionary terms --- .../ncbi_countries.csv | 650 +++++++++++++++------ .../ncbi_host_species.csv | 1 + .../ncbi_sequencing_technology.csv | 1 + 3 files changed, 476 insertions(+), 176 deletions(-) diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv index 4bea3ec..2599b62 100644 --- a/scripts/dict_ontology_standardization/ncbi_countries.csv +++ b/scripts/dict_ontology_standardization/ncbi_countries.csv @@ -10,15 +10,23 @@ Antigua and Barbuda,http://www.wikidata.org/entity/Q781 Argentina,http://www.wikidata.org/entity/Q414 Armenia,http://www.wikidata.org/entity/Q399 Australia,http://www.wikidata.org/entity/Q408 -Australia: Queensland,http://www.wikidata.org/entity/Q36074 -Australia: Victoria,http://www.wikidata.org/entity/Q36687 -"Australia: Melbourne, Victoria",http://www.wikidata.org/entity/Q3141 -Australia: Northern Territory,http://www.wikidata.org/entity/Q3235 -Australia: NSW,http://www.wikidata.org/entity/Q3224 +Australia:Queensland,http://www.wikidata.org/entity/Q36074 +Australia:Victoria,http://www.wikidata.org/entity/Q36687 +"Australia:Melbourne, Victoria",http://www.wikidata.org/entity/Q3141 +Australia:Northern Territory,http://www.wikidata.org/entity/Q3235 +Australia:NSW,http://www.wikidata.org/entity/Q3224 +Australia:South Australia,http://www.wikidata.org/entity/Q35715 Austria,http://www.wikidata.org/entity/Q40 Azerbaijan,http://www.wikidata.org/entity/Q227 Bahrain,http://www.wikidata.org/entity/Q398 Bangladesh,http://www.wikidata.org/entity/Q902 +Bangladesh:Barishal,http://www.wikidata.org/entity/Q747840 +Bangladesh:Chattogram,http://www.wikidata.org/entity/Q376749 +Bangladesh:Chittagong,http://www.wikidata.org/entity/Q376749 +Bangladesh:Dhaka,http://www.wikidata.org/entity/Q1354 +Bangladesh:Khulna,http://www.wikidata.org/entity/Q243325 +Bangladesh:Narayanganj,http://www.wikidata.org/entity/Q1990163 +Bangladesh:Rangpur,http://www.wikidata.org/entity/Q994514 Barbados,http://www.wikidata.org/entity/Q244 Belarus,http://www.wikidata.org/entity/Q184 Belgium,http://www.wikidata.org/entity/Q31 @@ -29,6 +37,7 @@ Bolivia,http://www.wikidata.org/entity/Q750 Bosnia and Herzegovina,http://www.wikidata.org/entity/Q225 Botswana,http://www.wikidata.org/entity/Q963 Brazil,http://www.wikidata.org/entity/Q155 +"Brazil:Feira de Santana, BA",http://www.wikidata.org/entity/Q194343 Brunei,http://www.wikidata.org/entity/Q921 Bulgaria,http://www.wikidata.org/entity/Q219 Burkina Faso,http://www.wikidata.org/entity/Q965 @@ -37,59 +46,59 @@ Cambodia,http://www.wikidata.org/entity/Q424 Cambodia:Sihanoukville,http://www.wikidata.org/entity/Q18207676 Cameroon,http://www.wikidata.org/entity/Q1009 Canada,http://www.wikidata.org/entity/Q16 -Canada: Toronto,http://www.wikidata.org/entity/Q172 +Canada:Toronto,http://www.wikidata.org/entity/Q172 Cape Verde,http://www.wikidata.org/entity/Q1011 Central African Republic,http://www.wikidata.org/entity/Q929 Chad,http://www.wikidata.org/entity/Q657 Chile,http://www.wikidata.org/entity/Q298 China,http://www.wikidata.org/entity/Q148 -China: Anhui,http://www.wikidata.org/entity/Q40956 -"China: Anhui, Fuyang":http://www.wikidata.org/entity/Q360584 -China: Beijing,http://www.wikidata.org/entity/Q956 -China: Chongqing,http://www.wikidata.org/entity/Q11725 -China: Fujian,http://www.wikidata.org/entity/Q41705 -China: Gansu,http://www.wikidata.org/entity/Q42392 -China: Guangdong,http://www.wikidata.org/entity/Q15175 -"China: Guangdong, Guangzhou",http://www.wikidata.org/entity/Q16572 -China: Guangxi Zhuang Autonomous Region,http://www.wikidata.org/entity/Q15176 -China: Guangzhou,http://www.wikidata.org/entity/Q16572 -China: Guizhou,http://www.wikidata.org/entity/Q47097 -China: Hangzhou,http://www.wikidata.org/entity/Q4970 -China: Hainan,http://www.wikidata.org/entity/Q42200 -China: Hebei,http://www.wikidata.org/entity/Q21208 -China: Heilongjiang,http://www.wikidata.org/entity/Q19206 -China: Henan,http://www.wikidata.org/entity/Q43684 -China: Hong Kong,http://www.wikidata.org/entity/Q8646 -China: HuaShang,http://www.wikidata.org/entity/Q148 -China: Hubei,http://www.wikidata.org/entity/Q46862 -"China: Hubei, Wuhan",http://www.wikidata.org/entity/Q11746 -China: Hunan,http://www.wikidata.org/entity/Q45761 -China: Inner Mongolia,http://www.wikidata.org/entity/Q41079 -China: Jiangsu,http://www.wikidata.org/entity/Q16963 -China: Jiangxi,http://www.wikidata.org/entity/Q57052 -China: Jilin,http://www.wikidata.org/entity/Q45208 -China: Liaoning,http://www.wikidata.org/entity/Q43934 -China: Macau,http://www.wikidata.org/entity/Q14773 -China: Nanchang,http://www.wikidata.org/entity/Q171943 -China: Ningxia Hui Autonomous Region,http://www.wikidata.org/entity/Q57448 -China: Qinghai,http://www.wikidata.org/entity/Q45833 -China: Shaanxi,http://www.wikidata.org/entity/Q47974 -China: Shandong,http://www.wikidata.org/entity/Q43407 -China: Shanghai,http://www.wikidata.org/entity/Q8686 +China:Anhui,http://www.wikidata.org/entity/Q40956 +"China:Anhui, Fuyang",http://www.wikidata.org/entity/Q360584 +China:Beijing,http://www.wikidata.org/entity/Q956 +China:Chongqing,http://www.wikidata.org/entity/Q11725 +China:Chengdu,http://www.wikidata.org/entity/Q30002 +China:Fujian,http://www.wikidata.org/entity/Q41705 +China:Gansu,http://www.wikidata.org/entity/Q42392 +China:Guangdong,http://www.wikidata.org/entity/Q15175 +"China:Guangdong, Guangzhou",http://www.wikidata.org/entity/Q16572 +China:Guangxi Zhuang Autonomous Region,http://www.wikidata.org/entity/Q15176 +China:Guangzhou,http://www.wikidata.org/entity/Q16572 +China:Guizhou,http://www.wikidata.org/entity/Q47097 +China:Hangzhou,http://www.wikidata.org/entity/Q4970 +China:Hainan,http://www.wikidata.org/entity/Q42200 +China:Hebei,http://www.wikidata.org/entity/Q21208 +China:Heilongjiang,http://www.wikidata.org/entity/Q19206 +China:Henan,http://www.wikidata.org/entity/Q43684 +China:Hong Kong,http://www.wikidata.org/entity/Q8646 +China:HuaShang,http://www.wikidata.org/entity/Q148 +China:Hubei,http://www.wikidata.org/entity/Q46862 +"China:Hubei, Wuhan",http://www.wikidata.org/entity/Q11746 +China:Hunan,http://www.wikidata.org/entity/Q45761 +China:Inner Mongolia,http://www.wikidata.org/entity/Q41079 +China:Jiangsu,http://www.wikidata.org/entity/Q16963 +"China:Jiangsu, Changzhou",http://www.wikidata.org/entity/Q16963 +China:Jiangxi,http://www.wikidata.org/entity/Q57052 +China:Jilin,http://www.wikidata.org/entity/Q45208 +China:Liaoning,http://www.wikidata.org/entity/Q43934 +China:Macau,http://www.wikidata.org/entity/Q14773 +China:Nanchang,http://www.wikidata.org/entity/Q171943 +China:Ningxia Hui Autonomous Region,http://www.wikidata.org/entity/Q57448 +China:Qinghai,http://www.wikidata.org/entity/Q45833 +China:Shaanxi,http://www.wikidata.org/entity/Q47974 +China:Shandong,http://www.wikidata.org/entity/Q43407 China:Shanghai,http://www.wikidata.org/entity/Q8686 -China: Shanxi,http://www.wikidata.org/entity/Q46913 -China: Shenzhen,http://www.wikidata.org/entity/Q15174 -China: Sichuan,http://www.wikidata.org/entity/Q19770 -China: Tianjin,http://www.wikidata.org/entity/Q11736 -China: Tibet Autonomous Region,http://www.wikidata.org/entity/Q17269 -China: Wuhan,http://www.wikidata.org/entity/Q11746 +China:Shanxi,http://www.wikidata.org/entity/Q46913 +China:Shenzhen,http://www.wikidata.org/entity/Q15174 +China:Sichuan,http://www.wikidata.org/entity/Q19770 +China:Tianjin,http://www.wikidata.org/entity/Q11736 +China:Tibet Autonomous Region,http://www.wikidata.org/entity/Q17269 China:Wuhan,http://www.wikidata.org/entity/Q11746 -China: Xinjiang,http://www.wikidata.org/entity/Q34800 -China: Yunnan,http://www.wikidata.org/entity/Q43194 -China: Zhejiang,http://www.wikidata.org/entity/Q16967 -"China: Zhejiang, Hangzhou",http://www.wikidata.org/entity/Q4970 +China:Xinjiang,http://www.wikidata.org/entity/Q34800 +China:Yunnan,http://www.wikidata.org/entity/Q43194 +China:Zhejiang,http://www.wikidata.org/entity/Q16967 +"China:Zhejiang, Hangzhou",http://www.wikidata.org/entity/Q4970 Colombia,http://www.wikidata.org/entity/Q739 -Colombia: Antioquia,http://www.wikidata.org/entity/Q123304 +Colombia:Antioquia,http://www.wikidata.org/entity/Q123304 Comoros,http://www.wikidata.org/entity/Q970 Costa Rica,http://www.wikidata.org/entity/Q800 Croatia,http://www.wikidata.org/entity/Q224 @@ -117,43 +126,146 @@ France,http://www.wikidata.org/entity/Q142 Gabon,http://www.wikidata.org/entity/Q1000 Georgia,http://www.wikidata.org/entity/Q230 Germany,http://www.wikidata.org/entity/Q183 -Germany: Bavaria,http://www.wikidata.org/entity/Q980 -Germany: Dusseldorf,http://www.wikidata.org/entity/Q1718 -Germany: Heinsberg,http://www.wikidata.org/entity/Q14833 -Germany: Starnberg,http://www.wikidata.org/entity/Q61936 +Germany:Bavaria,http://www.wikidata.org/entity/Q980 +Germany:Dusseldorf,http://www.wikidata.org/entity/Q1718 +Germany:Heinsberg,http://www.wikidata.org/entity/Q14833 +Germany:Starnberg,http://www.wikidata.org/entity/Q61936 Ghana,http://www.wikidata.org/entity/Q117 Greece,http://www.wikidata.org/entity/Q41 -Greece: Athens,http://www.wikidata.org/entity/Q1524 +Greece:Athens,http://www.wikidata.org/entity/Q1524 Grenada,http://www.wikidata.org/entity/Q769 Guatemala,http://www.wikidata.org/entity/Q774 +Guam,http://www.wikidata.org/entity/Q16635 Guinea,http://www.wikidata.org/entity/Q1006 Guinea-Bissau,http://www.wikidata.org/entity/Q1007 Guyana,http://www.wikidata.org/entity/Q734 Haiti,http://www.wikidata.org/entity/Q790 Honduras,http://www.wikidata.org/entity/Q783 Hungary,http://www.wikidata.org/entity/Q28 +Hong Kong,http://www.wikidata.org/entity/Q8646 Iceland,http://www.wikidata.org/entity/Q189 Icelandic Commonwealth,http://www.wikidata.org/entity/Q62389 India,http://www.wikidata.org/entity/Q668 -India: Ahmedabad,http://www.wikidata.org/entity/Q1070 -India: Kerala State,http://www.wikidata.org/entity/Q1186 -India: Rajkot,http://www.wikidata.org/entity/Q1815245 +"India:Assam, Golaghat",http://www.wikidata.org/entity/Q1708160 +India:Kerala State,http://www.wikidata.org/entity/Q1186 +"India:Ahmedabad",http://www.wikidata.org/entity/Q1070 +"India:Gujarat, Ahmedabad",http://www.wikidata.org/entity/Q1070 +"India:Bardoli",http://www.wikidata.org/entity/Q712003 +"India:Gujarat, Bardoli",http://www.wikidata.org/entity/Q712003 +"India:Bayad",http://www.wikidata.org/entity/Q25622187 +"India:Gujarat, Bayad",http://www.wikidata.org/entity/Q25622187 +"India:Bharuch",http://www.wikidata.org/entity/Q760153 +"India:Gujarat, Bharuch",http://www.wikidata.org/entity/Q760153 +"India:Bhavnagar",http://www.wikidata.org/entity/Q242992 +"India:Gujarat, Bhavnagar",http://www.wikidata.org/entity/Q242992 +"India:Bhuj",http://www.wikidata.org/entity/Q15244505 +"India:Gujarat, Bhuj",http://www.wikidata.org/entity/Q15244505 +"India:Botad",http://www.wikidata.org/entity/Q858162 +"India:Gujarat, Botad",http://www.wikidata.org/entity/Q858162 +"India:Choryasi",http://www.wikidata.org/entity/Q2757125 +"India:Gujarat, Choryasi",http://www.wikidata.org/entity/Q2757125 +"India:Chuda",http://www.wikidata.org/entity/Q724951 +"India:Gujarat, Chuda",http://www.wikidata.org/entity/Q724951 +"India:Dahegam",http://www.wikidata.org/entity/Q582485 +"India:Gujarat, Dahegam",http://www.wikidata.org/entity/Q582485 +"India:Dahod",http://www.wikidata.org/entity/Q186518 +"India:Gujarat, Dahod",http://www.wikidata.org/entity/Q186518 +"India:Daskroi",http://www.wikidata.org/entity/Q27684996 +"India:Gujarat, Daskroi",http://www.wikidata.org/entity/Q27684996 +"India:Dhanera",http://www.wikidata.org/entity/Q1266017 +"India:Gujarat, Dhanera",http://www.wikidata.org/entity/Q1266017 +"India:Dhansura",http://www.wikidata.org/entity/Q5269024 +"India:Gujarat, Dhansura",http://www.wikidata.org/entity/Q5269024 +"India:Dholka",http://www.wikidata.org/entity/Q1263568 +"India:Gujarat, Dholka",http://www.wikidata.org/entity/Q1263568 +"India:Gandhinagar",http://www.wikidata.org/entity/Q11910 +"India:Gujarat, Gandhinagar",http://www.wikidata.org/entity/Q11910 +"India:Ghogha",http://www.wikidata.org/entity/Q1707463 +"India:Gujarat, Ghogha",http://www.wikidata.org/entity/Q1707463 +"India:Gondal",http://www.wikidata.org/entity/Q1536978 +"India:Gujarat, Gondal",http://www.wikidata.org/entity/Q1536978 +"India:Himatnagar",http://www.wikidata.org/entity/Q1708155 +"India:Gujarat, Himatnagar",http://www.wikidata.org/entity/Q1708155 +"India:Jamnagar",http://www.wikidata.org/entity/Q1154 +"India:Gujarat, Jamnagar",http://www.wikidata.org/entity/Q1154 +"India:Jetpur",http://www.wikidata.org/entity/Q968713 +"India:Gujarat, Jetpur",http://www.wikidata.org/entity/Q968713 +"India:Junagadh",http://www.wikidata.org/entity/Q11864 +"India:Gujarat, Junagadh",http://www.wikidata.org/entity/Q11864 +"India:Kadi",http://www.wikidata.org/entity/Q2726621 +"India:Gujarat, Kadi",http://www.wikidata.org/entity/Q2726621 +"India:Kalol",http://www.wikidata.org/entity/Q2724740 +"India:Gujarat, Kalol",http://www.wikidata.org/entity/Q2724740 +"India:Kamrej",http://www.wikidata.org/entity/Q6359640 +"India:Gujarat, Kamrej",http://www.wikidata.org/entity/Q6359640 +"India:Kapadvanj",http://www.wikidata.org/entity/Q2341421 +"India:Gujarat, Kapadvanj",http://www.wikidata.org/entity/Q2341421 +"India:Kheda",http://www.wikidata.org/entity/Q775759 +"India:Gujarat, Kheda",http://www.wikidata.org/entity/Q775759 +"India:Khedbrahma",http://www.wikidata.org/entity/Q9461 +"India:Gujarat, Khedbrahma",http://www.wikidata.org/entity/Q9461 +"India:Kodinar",http://www.wikidata.org/entity/Q2239007 +"India:Gujarat, Kodinar",http://www.wikidata.org/entity/Q2239007 +"India:Mahemdavad",http://www.wikidata.org/entity/Q2233469 +"India:Gujarat, Mahemdavad",http://www.wikidata.org/entity/Q2233469 +"India:Mahuva",http://www.wikidata.org/entity/Q1924998 +"India:Gujarat, Mahuva",http://www.wikidata.org/entity/Q1924998 +"India:Mandvi",http://www.wikidata.org/entity/Q2570689 +"India:Gujarat, Mandvi",http://www.wikidata.org/entity/Q2570689 +"India:Mansa",http://www.wikidata.org/entity/Q720211 +"India:Gujarat, Mansa",http://www.wikidata.org/entity/Q720211 +"India:Modasa",http://www.wikidata.org/entity/Q2320097 +"India:Gujarat, Modasa",http://www.wikidata.org/entity/Q2320097 +"India:Nadiad",http://www.wikidata.org/entity/Q219039 +"India:Gujarat, Nadiad",http://www.wikidata.org/entity/Q219039 +"India:Olpad",http://www.wikidata.org/entity/Q2726258 +"India:Gujarat, Olpad",http://www.wikidata.org/entity/Q2726258 +"India:Palanpur",http://www.wikidata.org/entity/Q949907 +"India:Gujarat, Palanpur",http://www.wikidata.org/entity/Q949907 +"India:Prantij",http://www.wikidata.org/entity/Q2724388 +"India:Gujarat, Prantij",http://www.wikidata.org/entity/Q2724388 +"India:Rajkot",http://www.wikidata.org/entity/Q1815245 +"India:Gujarat, Rajkot",http://www.wikidata.org/entity/Q1815245 +"India:Savli",http://www.wikidata.org/entity/Q7428379 +"India:Gujarat, Savli",http://www.wikidata.org/entity/Q7428379 +"India:Surat",http://www.wikidata.org/entity/Q4629 +"India:Gujarat, Surat",http://www.wikidata.org/entity/Q4629 +"India:Talod",http://www.wikidata.org/entity/Q2570216 +"India:Gujarat, Talod",http://www.wikidata.org/entity/Q2570216 +"India:Una",http://www.wikidata.org/entity/Q1622928 +"India:Gujarat, Una",http://www.wikidata.org/entity/Q1622928 +"India:Vadodara",http://www.wikidata.org/entity/Q11909 +"India:Gujarat, Vadodara",http://www.wikidata.org/entity/Q11909 +"India:Hyderabad",http://www.wikidata.org/entity/Q1361 +"India:hamadan",http://www.wikidata.org/entity/Q1361 +"India:Hamadan",http://www.wikidata.org/entity/Q28587 +"Iraq:Erbil",http://www.wikidata.org/entity/Q132754 +"Iraq:Kurdistan region, Erbil",http://www.wikidata.org/entity/Q132754 +"Iraq:Kurdistan region, Erbil",http://www.wikidata.org/entity/Q132754 Indonesia,http://www.wikidata.org/entity/Q252 Iran,http://www.wikidata.org/entity/Q794 -Iran: Qum,http://www.wikidata.org/entity/Q131664 -Iran: Tehran,http://www.wikidata.org/entity/Q3616 +Iran:Qum,http://www.wikidata.org/entity/Q131664 +Iran:Tehran,http://www.wikidata.org/entity/Q3616 Iraq,http://www.wikidata.org/entity/Q796 Ireland,http://www.wikidata.org/entity/Q27 Israel,http://www.wikidata.org/entity/Q801 Italy,http://www.wikidata.org/entity/Q38 -Italy: Cagliari,http://www.wikidata.org/entity/Q1897 -Italy: Lazio,http://www.wikidata.org/entity/Q1282 -Italy: Palermo,http://www.wikidata.org/entity/Q2656 -Italy: Rome,http://www.wikidata.org/entity/Q220 +Italy:Cagliari,http://www.wikidata.org/entity/Q1897 +Italy:Lazio,http://www.wikidata.org/entity/Q1282 +Italy:Milan,http://www.wikidata.org/entity/Q490 +Italy:Palermo,http://www.wikidata.org/entity/Q2656 +Italy:Rome,http://www.wikidata.org/entity/Q220 Ivory Coast,http://www.wikidata.org/entity/Q1008 Jamaica,http://www.wikidata.org/entity/Q766 Japan,http://www.wikidata.org/entity/Q17 +Japan:Chiba,http://www.wikidata.org/entity/Q170616 +Japan:Ishikawa,http://www.wikidata.org/entity/Q1205335 +Japan:Kochi,http://www.wikidata.org/entity/Q200251 +Japan:Saitama,http://www.wikidata.org/entity/Q134635 +Japan:Tokyo,http://www.wikidata.org/entity/Q1490 Jordan,http://www.wikidata.org/entity/Q810 +Jordan:Amman,http://www.wikidata.org/entity/Q3805 +Jordan:Irbid,http://www.wikidata.org/entity/Q194165 Kazakhstan,http://www.wikidata.org/entity/Q232 Kenya,http://www.wikidata.org/entity/Q114 Kingdom of Denmark,http://www.wikidata.org/entity/Q756617 @@ -174,42 +286,60 @@ Madagascar,http://www.wikidata.org/entity/Q1019 Malawi,http://www.wikidata.org/entity/Q1020 Malaysia,http://www.wikidata.org/entity/Q833 Maldives,http://www.wikidata.org/entity/Q826 +Malaysia:Kuala Lumpur,http://www.wikidata.org/entity/Q1865 Mali,http://www.wikidata.org/entity/Q912 Malta,http://www.wikidata.org/entity/Q233 Marshall Islands,http://www.wikidata.org/entity/Q709 Mauritania,http://www.wikidata.org/entity/Q1025 Mauritius,http://www.wikidata.org/entity/Q1027 Mexico,http://www.wikidata.org/entity/Q96 +Mexico:Baja California Sur,http://www.wikidata.org/entity/Q46508 +Mexico:Hidalgo,http://www.wikidata.org/entity/Q80903 +Mexico:Mexico City,http://www.wikidata.org/entity/Q1489 +Mexico:Mexico State,http://www.wikidata.org/entity/Q82112 +Mexico:Michoacan,http://www.wikidata.org/entity/Q79861 +Mexico:Morelos,http://www.wikidata.org/entity/Q66117 +Mexico:Oaxaca,http://www.wikidata.org/entity/Q34110 +Mexico:Puebla,http://www.wikidata.org/entity/Q79923 +Mexico:Queretaro,http://www.wikidata.org/entity/Q79754 Moldova,http://www.wikidata.org/entity/Q217 Monaco,http://www.wikidata.org/entity/Q235 Mongolia,http://www.wikidata.org/entity/Q711 Montenegro,http://www.wikidata.org/entity/Q236 Morocco,http://www.wikidata.org/entity/Q1028 +Morocco:Casablanca,http://www.wikidata.org/entity/Q7903 +Morocco:casablanca,http://www.wikidata.org/entity/Q7903 Mozambique,http://www.wikidata.org/entity/Q1029 Myanmar,http://www.wikidata.org/entity/Q836 Namibia,http://www.wikidata.org/entity/Q1030 Nauru,http://www.wikidata.org/entity/Q697 -Netherlands: Milheeze,http://www.wikidata.org/entity/Q3314115 +Netherlands:Milheeze,http://www.wikidata.org/entity/Q3314115 +Netherlands,http://www.wikidata.org/entity/Q55 +Netherlands:Leiden,http://www.wikidata.org/entity/Q33456378 Nepal,http://www.wikidata.org/entity/Q837 +Nepal:Kathmandu,http://www.wikidata.org/entity/Q3037 New Zealand,http://www.wikidata.org/entity/Q664 +New Zealand:Auckland,http://www.wikidata.org/entity/Q37100 Nicaragua,http://www.wikidata.org/entity/Q811 Niger,http://www.wikidata.org/entity/Q1032 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Uzbekistan,http://www.wikidata.org/entity/Q265 Vanuatu,http://www.wikidata.org/entity/Q686 Vatican City,http://www.wikidata.org/entity/Q237 Venezuela,http://www.wikidata.org/entity/Q717 Viet nam,http://www.wikidata.org/entity/Q881 Viet Nam,http://www.wikidata.org/entity/Q881 -Viet Nam: Ho Chi Minh city,http://www.wikidata.org/entity/Q1854 +Viet Nam:Ho Chi Minh city,http://www.wikidata.org/entity/Q1854 Vietnam,http://www.wikidata.org/entity/Q881 Yemen,http://www.wikidata.org/entity/Q805 Zambia,http://www.wikidata.org/entity/Q953 diff --git a/scripts/dict_ontology_standardization/ncbi_host_species.csv b/scripts/dict_ontology_standardization/ncbi_host_species.csv index 0bfc455..2add179 100644 --- a/scripts/dict_ontology_standardization/ncbi_host_species.csv +++ b/scripts/dict_ontology_standardization/ncbi_host_species.csv @@ -3,6 +3,7 @@ human,http://purl.obolibrary.org/obo/NCBITaxon_9606 Human,http://purl.obolibrary.org/obo/NCBITaxon_9606 sapiens,http://purl.obolibrary.org/obo/NCBITaxon_9606 homosapiens,http://purl.obolibrary.org/obo/NCBITaxon_9606 +howo sapiens,http://purl.obolibrary.org/obo/NCBITaxon_9606 Mustela lutreola,http://purl.obolibrary.org/obo/NCBITaxon_9666 Manis javanica,http://purl.obolibrary.org/obo/NCBITaxon_9974 Felis catus,http://purl.obolibrary.org/obo/NCBITaxon_9685 diff --git a/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv b/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv index 59c4800..0a3f926 100644 --- a/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv +++ b/scripts/dict_ontology_standardization/ncbi_sequencing_technology.csv @@ -38,6 +38,7 @@ MGISEQ2000,http://virtual-bh/MGISEQ2000 Illumina HiSeq X,http://www.ebi.ac.uk/efo/EFO_0008567 ONT GridION X5,http://www.ebi.ac.uk/efo/EFO_0008633 ONT PremethION,http://www.ebi.ac.uk/efo/EFO_0008634 +PromethION,http://www.ebi.ac.uk/efo/EFO_0008634 PacBio RS II,http://www.ebi.ac.uk/efo/EFO_0008631 PacBio Sequel System,http://www.ebi.ac.uk/efo/EFO_0008630 Illumina Genome Analyzer,http://www.ebi.ac.uk/efo/EFO_0004200 -- cgit v1.2.3