From 0d7f1bc0000df215e85f0da1143703e311328dea Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Fri, 13 Nov 2020 22:41:47 +0100
Subject: fix check date sra script

---
 scripts/create_sra_metadata/create_sra_metadata.py              | 8 ++++----
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 1 -
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 85d4e9e..f5dc0c8 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -290,10 +290,10 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
         year, month, day = [int(x) for x in info_for_yaml_dict['sample']['collection_date'].split('-')]
 
         collection_date_in_yaml = datetime(year, month, day)
-
-        if accession not in not_created_accession_dict:
-            not_created_accession_dict[accession] = []
-        not_created_accession_dict[accession].append('collection_date too early')
+        if collection_date_in_yaml < min_acceptable_collection_date:
+            if accession not in not_created_accession_dict:
+                not_created_accession_dict[accession] = []
+            not_created_accession_dict[accession].append('collection_date too early')
 
     if 'sample_sequencing_technology' not in info_for_yaml_dict['technology']:
         # print(accession_version, ' - technology not found')
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 1352027..442a9a5 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -409,7 +409,6 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
                 year, month, day = [int(x) for x in info_for_yaml_dict['sample']['collection_date'].split('-')]
 
                 collection_date_in_yaml = datetime(year, month, day)
-
                 if collection_date_in_yaml < min_acceptable_collection_date:
                     if accession_version not in not_created_accession_dict:
                         not_created_accession_dict[accession_version] = []
-- 
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