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| author | AndreaGuarracino | 2020-09-26 12:12:17 +0200 |
|---|---|---|
| committer | AndreaGuarracino | 2020-09-26 12:12:17 +0200 |
| commit | 7c12e4976337a063301be260cb3954bf4303f5e0 (patch) | |
| tree | a25effc5a4afca5aee235e2b9e986abfab10ea12 /scripts/esr_samples/template.yaml | |
| parent | 8e9247ab29db30e9bb7c87bef5f127b3b5cec699 (diff) | |
| download | bh20-seq-resource-7c12e4976337a063301be260cb3954bf4303f5e0.tar.gz bh20-seq-resource-7c12e4976337a063301be260cb3954bf4303f5e0.tar.lz bh20-seq-resource-7c12e4976337a063301be260cb3954bf4303f5e0.zip | |
script for processing the metadata of the ESR samples; moved delete_entries_on_arvados script in scripts directory
Diffstat (limited to 'scripts/esr_samples/template.yaml')
| -rw-r--r-- | scripts/esr_samples/template.yaml | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/scripts/esr_samples/template.yaml b/scripts/esr_samples/template.yaml new file mode 100644 index 0000000..98f08a6 --- /dev/null +++ b/scripts/esr_samples/template.yaml @@ -0,0 +1,29 @@ +id: placeholder + +host: + host_species: "$host_species" + +sample: + sample_id: "$sample_id" + collection_date: "$collection_date" + collection_location: "$collection_location" + specimen_source: ["$specimen_source"] + +virus: + virus_species: "$virus_species" + +technology: + sample_sequencing_technology: ["http://www.ebi.ac.uk/efo/EFO_0008632"] + sequence_assembly_method: "https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics" + additional_technology_information: "Artic V3 workflow" + +submitter: + authors: ["Jemma L Geoghegan", "Xiaoyun Ren", "Matthew Storey", "James Hadfield", "Lauren Jelley", "Sarah Jefferies", "Jill Sherwood", "Shevaun Paine", "Sue Huang", "Jordan Douglas", "Fabio K Mendes", "Andrew Sporle", "Michael G Baker", "David R Murdoch", "Nigel French", "Colin R Simpson", "David Welch", "Alexei J Drummond", "Edward C Holmes", "Sebastian Duchene", "Joep de Ligt"] + submitter_name: ["Joep de Ligt"] + submitter_address: "PO Box 50348, Porirua 5240, New Zealand" + originating_lab: "ESR" + submitter_sample_id: "$submitter_sample_id" + publication: "https://doi.org/10.1101/2020.08.05.20168930" + submitter_orcid: ["https://orcid.org/0000-0003-0970-0153"] + additional_submitter_information: "2020-08-20" +
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