pyhegp/tests, branch main Homomorphic encryption of genotypes and phenotypes http://git.systemreboot.net/pyhegp/atom?h=main 2026-01-28T01:18:09+00:00 Require that (chromosome, position) in genotype frames is unique. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T01:04:40+00:00 urn:sha1:83fff7bec63b80e5c89bbffbac95504660013dce Earlier, we required that (chromosome, position, reference) was unique. We tighten this restriction requiring (chromosome, position) be unique. Therefore, there can be only one reference allele at any given chromosome and position. Restrict reference to single character. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T01:00:44+00:00 urn:sha1:d4afd6d2a02c12697c959c046cd345ab0a645f72 Do not drop zero standard deviation SNPs with --only-center. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T00:23:56+00:00 urn:sha1:ee0b1836f33004c62d05408c4ee2b69086652131 Remove unnecessary is_phenotype_metadata_column import. 2026-01-28T00:08:34+00:00 Arun Isaac 2026-01-27T22:03:13+00:00 urn:sha1:963e662a93291b2e5297f637e8a59947657d4325 Move SNP deletion out of encrypt_genotype function. 2026-01-28T00:07:26+00:00 Arun Isaac 2026-01-27T21:58:40+00:00 urn:sha1:a8819ad9bdef7ef46371a26b6a6759388705afa9 Allow generation of block diagonal keys. 2026-01-16T23:06:39+00:00 Arun Isaac 2026-01-16T18:55:38+00:00 urn:sha1:d5947039a70694024e20ed79ee4151b5d35600fa Allow generation of block diagonal keys, and extend tests to test with different number of blocks. Add BlockDiagonalMatrix. 2026-01-16T23:06:39+00:00 Arun Isaac 2026-01-16T18:53:35+00:00 urn:sha1:880d164df4d88f2521e857cc5b6b30aa6004a237 Remove unnecessary imports from test_serialization.py. 2026-01-16T23:06:39+00:00 Arun Isaac 2026-01-16T16:19:06+00:00 urn:sha1:21c808b7f7b4722af82010d860f97b07d6034672 Add --only-center option. 2026-01-16T23:06:38+00:00 Arun Isaac 2026-01-15T02:58:29+00:00 urn:sha1:edb6b37ed7582ceb0de5547debdc3598973604ed Separate centering from normalization. 2026-01-16T23:06:38+00:00 Arun Isaac 2026-01-15T02:57:02+00:00 urn:sha1:1a907c0b75080891a960e561bcca5d7a35624cac