pyhegp, branch main Homomorphic encryption of genotypes and phenotypes http://git.systemreboot.net/pyhegp/atom?h=main 2026-01-28T01:18:09+00:00 Require that (chromosome, position) in genotype frames is unique. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T01:04:40+00:00 urn:sha1:83fff7bec63b80e5c89bbffbac95504660013dce Earlier, we required that (chromosome, position, reference) was unique. We tighten this restriction requiring (chromosome, position) be unique. Therefore, there can be only one reference allele at any given chromosome and position. Restrict reference to single character. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T01:00:44+00:00 urn:sha1:d4afd6d2a02c12697c959c046cd345ab0a645f72 Do not drop zero standard deviation SNPs with --only-center. 2026-01-28T01:18:09+00:00 Arun Isaac 2026-01-28T00:23:56+00:00 urn:sha1:ee0b1836f33004c62d05408c4ee2b69086652131 Remove unnecessary is_phenotype_metadata_column import. 2026-01-28T00:08:34+00:00 Arun Isaac 2026-01-27T22:03:13+00:00 urn:sha1:963e662a93291b2e5297f637e8a59947657d4325 Explain why SNPs are being dropped. 2026-01-28T00:08:33+00:00 Arun Isaac 2026-01-27T22:03:03+00:00 urn:sha1:28fdc651f0174b60282392105992fd7c356459c7 Move SNP deletion out of encrypt_genotype function. 2026-01-28T00:07:26+00:00 Arun Isaac 2026-01-27T21:58:40+00:00 urn:sha1:a8819ad9bdef7ef46371a26b6a6759388705afa9 Recognize "intercept" as a phenotype metadata column. 2026-01-27T21:52:00+00:00 Arun Isaac 2026-01-27T21:52:00+00:00 urn:sha1:572242b659219456275bcdd254f65929af96dc35 Remove key_blocks variable name in click.option. 2026-01-27T18:25:09+00:00 Arun Isaac 2026-01-27T18:25:09+00:00 urn:sha1:d6f0caec53f0396fccfc40866255d2f8a22003fe The key_blocks variable name is optional since the click option has the same name. Add --key-blocks argument. 2026-01-16T23:06:39+00:00 Arun Isaac 2026-01-16T18:56:45+00:00 urn:sha1:d3f765d1f9b8aaab1e1544a9643b659163285284 Allow generation of block diagonal keys. 2026-01-16T23:06:39+00:00 Arun Isaac 2026-01-16T18:55:38+00:00 urn:sha1:d5947039a70694024e20ed79ee4151b5d35600fa Allow generation of block diagonal keys, and extend tests to test with different number of blocks.