Concise Common Workflow Language (mirror of https://github.com/arunisaac/ccwl) http://git.systemreboot.net/ccwl/atom?h=v0.2.0 2021-11-01T20:01:37+00:00 2021-11-01T20:01:37+00:00 Arun Isaac 2021-10-31T16:22:43+00:00 urn:sha1:de4f458df3e58408e1af2375d0f3b3f86b350a73 What we call "graphviz syntax" is actually the "graphviz dot language". Rename accordingly. * ccwl/graphviz.scm (workflow->graphviz): Rename to workflow->dot. Call graph->dot instead of graph->graphviz. (escape-id): Update docstring to mention dot. (graph->graphviz): Rename to graph->dot. Update docstring to mention dot. * scripts/ccwl.in (main): Accept --to=dot instead of --to=graphviz. Update --help usage information. * Makefile.am (%.dot): Pass --to=dot instead of --to=graphviz. 2021-10-12T11:00:39+00:00 Arun Isaac 2021-10-12T10:51:57+00:00 urn:sha1:b47e6fdbe7e8550dd10eee077278d0007137f37f * scripts/ccwl.in: Import (ccwl graphviz). (main): Implement the --to option. 2021-10-12T10:47:02+00:00 Arun Isaac 2021-10-12T09:57:37+00:00 urn:sha1:e553d183d0468cb67c0aa850538b886ed557635d * scripts/ccwl.in: Import (srfi srfi-28). (invalid-operand): New function. (%help-option): New variable. (main): Print usage information on --help and incorrect usage. 2021-10-12T10:45:47+00:00 Arun Isaac 2021-10-12T09:26:59+00:00 urn:sha1:c3077419d1a6dc2a735fb3408aaf4842a46ea833 * scripts/ccwl.in: Import (srfi srfi-37). (invalid-option): New function. (main): Use args-fold to extract source filename. 2021-10-12T08:58:00+00:00 Arun Isaac 2021-10-12T08:58:00+00:00 urn:sha1:db3c13ce159060d57364dcafbbafc6ec52ece981 This makes it easier to record changes in the changelog of commit messages. * scripts/ccwl.in: Invoke main. (main): New function. 2021-10-11T09:21:22+00:00 Arun Isaac 2021-10-11T09:10:42+00:00 urn:sha1:9a354d0b99da83f60ab68f0151d6f0d5488b7a93 This factorization is required to support other compilation targets such as graphviz, bash, scheme, etc. * ccwl/cwl.scm: New file. * Makefile.am (SOURCES): Register it. * ccwl/ccwl.scm (ccwl): Export command?, command-inputs, command-outputs, command-args, command-stdin, command-other, workflow?, workflow-steps, workflow-inputs, workflow-outputs, workflow-other, input?, input-id, input-type, input-label, input-default, input-position, input-prefix, input-other, output?, output-id, output-type, output-binding, output-source, output-other, step?, step-id, step-run, step-in, step-out, unspecified-default?. (<workflow>): New type. (filter-alist): Move to cwl.scm. (make-workflow): Refactor into workflow->cwl-scm in cwl.scm. (output->cwl): Move to cwl.scm as output->cwl-scm. (command->cwl): Move to cwl.scm as command->cwl-scm. (workflow-steps): Rename to collect-steps. Clarify docstring. (workflow): Use collect-steps instead of workflow-steps. Explicitly pass empty list as other argument of make-workflow. Add TODO note to implement it properly. * scripts/ccwl.in: Import (ccwl cwl) instead of (ccwl yaml). Use workflow->cwl instead of scm->yaml. * tests/ccwl.scm ("stdin input should not have inputBinding"): Use command->cwl-scm from (ccwl cwl) instead of command->cwl from (ccwl ccwl). 2021-07-04T12:46:42+00:00 Arun Isaac 2021-07-03T13:12:31+00:00 urn:sha1:74caec6d8ddb23f72e2b08d7a0e13dcade01ec09 * scripts/ccwl.in: Do not compile ccwl files. 2021-05-24T11:33:03+00:00 Arun Isaac 2021-05-24T11:31:47+00:00 urn:sha1:aabbd7069b57ef830ff482cf5fc5645912fc4195 * pre-inst-env.in, scripts/ccwl.in: Remove unnecessary -s flag from shebang. 2021-04-25T18:55:07+00:00 Arun Isaac 2021-04-25T18:13:47+00:00 urn:sha1:d68dc8541cbcc3d04b43bdad8bed5718d18b4676 * configure.ac: Generate scripts/ccwl. * scripts/ccwl: Rename to ... * scripts/ccwl.in: ... this. Set path to guile in shebang as an autoconf substitution. 2021-04-25T18:55:06+00:00 Arun Isaac 2021-04-25T18:10:40+00:00 urn:sha1:9ab2f84cfa1d4e7016dd0aba1fa9a41eec85b4a1 * scripts/ccwl: New file.