Concise Common Workflow Language (mirror of https://github.com/arunisaac/ccwl) http://git.systemreboot.net/ccwl/atom?h=v0.4.0 2024-05-30T02:09:13+00:00 2024-05-30T02:09:13+00:00 Arun Isaac 2024-05-30T02:09:13+00:00 urn:sha1:7d1b0b9338af5501c6282cdaf3cacc41075a04c9 * doc/ccwl.skb (Cookbook)[Prefix arguments]: Use section- prefix in identifier. 2024-05-30T01:42:40+00:00 Arun Isaac 2024-05-30T01:42:40+00:00 urn:sha1:2a5b73121ce7ce4c4bd5f3f482187dd22489e330 * doc/ccwl.skb (Cookbook)[Prefix arguments]: New section. * doc/prefix-arguments.scm: New file. 2024-05-30T01:22:30+00:00 Arun Isaac 2024-05-30T01:22:30+00:00 urn:sha1:40db32d3c36b4e304b9c8e39ae7f252aef5522d7 * doc/ccwl.skb (Cookbook)[Pass in arbitrary CWL Requirements]: New section. * doc/inline-javascript-requirement.scm, doc/resource-requirement.scm: New files. 2024-04-12T22:35:44+00:00 Arun Isaac 2024-04-12T22:35:44+00:00 urn:sha1:b73b787d0fe6843de65f1206270cff8de3333b83 Curly quotation marks are better typography than straight quotation marks. Straight quotation marks were introduced only due to the physical limitations of the typewriter. * doc/ccwl.skb: Use curly single quotation marks. 2024-04-12T22:34:10+00:00 Arun Isaac 2024-04-12T22:34:10+00:00 urn:sha1:19aac5603966d04ff6a728c7a832fc7a389dbbeb * doc/ccwl.skb (Guide to the source code): New chapter. (Contributing): Demote to section inside "Guide to the source code". 2024-03-22T02:13:35+00:00 Arun Isaac 2024-03-22T02:13:35+00:00 urn:sha1:213729d512924a088ea46adeb97ae2003acff399 * doc/ccwl.skb (Cookbook)[Javascript expressions via ExpressionTool]: Markup "0" and "n-1" as code. 2024-03-22T01:48:25+00:00 Arun Isaac 2024-03-22T01:29:40+00:00 urn:sha1:e430937727b881be2b2428ad0f09a32ea0aaf198 js-expression corresponds to ExpressionTool in the CWL specification. * ccwl/ccwl.scm (<js-expression>): New type. (js-expression): New macro. (function-inputs, function-outputs, function-object): Support <js-expression> objects. (function-input-keys): Mention <js-expression> objects in docstring. * ccwl/cwl.scm (function->cwl, workflow->cwl-scm): Support <js-expression> objects. (command->cwl-scm): Move staging requirements handling to ... (staging-requirements): ... this new function. (js-expression->cwl, js-expression->cwl-scm): New functions. * ccwl/graphviz.scm (function->dot): Support <js-expression> objects. (command->graph): Abstract to ... (single-node-workflow->graph): ... this new function. (js-expression->dot, js-expression->graph): New functions. * scripts/ccwl (main): Support <js-expression> objects. * doc/ccwl.skb (Cookbook){Javascript expressions via ExpressionTool}: New section. * doc/js-expression-iota.scm: New file. 2023-12-01T22:35:23+00:00 Arun Isaac 2023-12-01T22:34:03+00:00 urn:sha1:770b738fe62112fc16c5213bd5769a8a54074fc7 * ccwl/ccwl.scm (collect-steps): Implement identity construct. * doc/ccwl.skb (Cookbook)[The identity construct]: New section. * doc/identity-construct.scm: New file. 2023-11-23T19:02:58+00:00 Arun Isaac 2023-11-23T17:49:45+00:00 urn:sha1:9f601fc3f131e82e1ee5791783d330bddde468d2 * ccwl/ccwl.scm (<input>)[separator]: New field. * ccwl/ccwl.scm (run-arg-position, run-args): Support array input specifiers. (run-arg-separator): New function. (command): Set separator on input objects. * ccwl/cwl.scm (input->cwl-scm): Serialize itemSeparator. * tests/ccwl.scm ("commands with non-string #:separator parameters must raise a &ccwl-violation condition"): New test. * doc/ccwl.skb (Cookbook)[Array input item separators]: New section. * doc/array-input-item-separators.scm: New file. 2023-11-21T23:32:46+00:00 Arun Isaac 2023-11-21T23:32:46+00:00 urn:sha1:eaf91f91fd173200ddb65b29bbcfbcab8d2d2cdf * doc/ccwl.skb (Tutorial)[Let's write a spell check workflow]: Update source reference to rename.