bh20-seq-resource/workflows, branch analysis-refactor Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=analysis-refactor 2020-06-24T06:43:45+00:00 Merge pull request #85 from AndreaGuarracino/patch-18 2020-06-24T06:43:45+00:00 LLTommy 2020-06-24T06:43:45+00:00 urn:sha1:b188fa4d896e1159ae424ab1c9bcfb21eb8ac67b removed double sorting Adjust QC filter and relabel output sequence with sample_id 2020-06-22T18:25:45+00:00 Peter Amstutz 2020-06-22T18:23:40+00:00 urn:sha1:76883d02e6073f990ea980dad1f8cf21121255ff removed double sorting 2020-06-18T16:08:27+00:00 Andrea Guarracino 2020-06-18T16:08:27+00:00 urn:sha1:bbc563d1d6d45bcaa15d054f872bb3a448c94734 The -s argument in odgi build do the same thing that odgi sort -p s does. tweaks for proper graph browser output 2020-06-11T17:15:56+00:00 Michael R. Crusoe 2020-06-11T17:15:56+00:00 urn:sha1:e3b91a7b1b8da94fa1e42bf3906c6c34a82ee80d update tool sub repo 2020-06-02T14:33:45+00:00 Michael R. Crusoe 2020-06-02T14:33:45+00:00 urn:sha1:64ab6f754746179cff0f4af5c331aa761cf96efb Can have list of sequence labels to exclude from combined fasta 2020-05-26T22:12:23+00:00 Peter Amstutz 2020-05-26T21:30:30+00:00 urn:sha1:7a96d0b1b15ab28fe3a618db35364891ab5d0328 refs #68 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Workflow fixes 2020-05-14T20:47:08+00:00 Peter Amstutz 2020-05-14T20:47:08+00:00 urn:sha1:a259ff7f26458c0810741508df39a4b391ff18d4 Merge pull request #49 from mr-c/add_pangenome_browser_prep 2020-05-11T14:38:15+00:00 Peter Amstutz 2020-05-11T14:38:15+00:00 urn:sha1:55bab826fda6c6bc3190476f8e2c61e51ef092d6 add pangenome browser prep preserve the directory layout of segmentation.py 2020-05-05T16:24:56+00:00 Michael R. Crusoe 2020-05-05T16:24:56+00:00 urn:sha1:ca7df27a6349e7b7009e1d1d5fec372106a072b1 move some tools into the shared repo 2020-05-05T11:11:02+00:00 Michael R. Crusoe 2020-05-05T11:11:02+00:00 urn:sha1:6599feb6a6f8b488bd2d12fcf532c3b8a917a17f