bh20-seq-resource/workflows/yamlfa2ttl, branch yamlfa2ttl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=yamlfa2ttl 2021-01-08T22:44:47+00:00 sample_id in the FASTA has to match the sample_id in the YAML 2021-01-08T22:44:47+00:00 AndreaGuarracino 2021-01-08T22:44:47+00:00 urn:sha1:53a47a18a45270c3f037fabe9cc973c66bfe50bf added check_metadata workflow and script 2021-01-07T23:25:55+00:00 AndreaGuarracino 2021-01-07T23:25:55+00:00 urn:sha1:2ddf72a4028475eb65dfeab153f3565e698d5338 added check_sequence workflow and script 2021-01-07T22:02:54+00:00 AndreaGuarracino 2021-01-07T22:02:54+00:00 urn:sha1:141e619929cee17018417d71111063015e73c366 avoided using resource_stream, now check_format.py works in CWL 2021-01-06T13:09:59+00:00 AndreaGuarracino 2021-01-06T13:09:59+00:00 urn:sha1:430090a65786b0b9dde9e1319a740f95579d0275 added check_format workflow and script 2021-01-05T13:18:26+00:00 AndreaGuarracino 2021-01-05T13:18:26+00:00 urn:sha1:e9f73388c810c678a69ce23c925d7914ba99a251 created placeholder for the YAML+FASTA to TTL workflow 2021-01-04T17:41:38+00:00 AndreaGuarracino 2021-01-04T17:41:38+00:00 urn:sha1:491b39273b54ca89861febf5c27d28f032ba1c49