bh20-seq-resource/workflows/pull-data, branch yamlfa2ttl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=yamlfa2ttl 2021-01-07T09:17:59+00:00 Allow for xml and xml.gz files 2021-01-07T09:17:59+00:00 Pjotr Prins 2021-01-07T09:17:47+00:00 urn:sha1:329a1a7e122eda41016185d1b1e8d50d97f8857b cleaned utils.py 2021-01-06T13:13:13+00:00 AndreaGuarracino 2021-01-06T13:13:13+00:00 urn:sha1:27a2b926036211469eccbf8c3d9580182482bdc2 cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.py 2021-01-05T16:56:19+00:00 AndreaGuarracino 2021-01-05T16:56:19+00:00 urn:sha1:911ba372cfc4b35c5b52d18a573a636ea78d16d7 cleaning genbank-fetch-ids.py 2021-01-05T16:35:46+00:00 AndreaGuarracino 2021-01-05T16:35:46+00:00 urn:sha1:f7666a7766c8138aa690340fc68cb67f709327f3 API: fix returned record to include original metadata 2021-01-05T09:34:26+00:00 Pjotr Prins 2021-01-05T09:34:26+00:00 urn:sha1:9d75ce088e6388bf23ae077fd06b2a3f51be1bda mapping: no longer requires specimen file for genbank output 2021-01-04T10:25:36+00:00 Pjotr Prins 2021-01-04T10:25:36+00:00 urn:sha1:f9f27a787fef0ad58c1ae465d8ba1ee4634083ae Removing refs. No point in guessing terms 2021-01-04T09:41:58+00:00 Pjotr Prins 2021-01-04T09:41:58+00:00 urn:sha1:bf8f13af6f083d382b4a3900566ef5e329084cbf mapping sample_species using regex 2021-01-04T09:40:54+00:00 Pjotr Prins 2021-01-04T09:40:54+00:00 urn:sha1:3593b3f6a835f6c5927cbb1cc79e3db3c5d0053a Started on normalization 2021-01-04T08:58:38+00:00 Pjotr Prins 2021-01-04T08:58:38+00:00 urn:sha1:1c4e055b8a9dc53b7fdbdf12d4b0a7e877fbc2ef genbank: specimen source 2021-01-03T11:17:29+00:00 Pjotr Prins 2021-01-03T11:17:29+00:00 urn:sha1:ba4161b1660c3a67090dd3715e9862906fb1cc5f