bh20-seq-resource/workflows/pull-data, branch generate-cwl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=generate-cwl 2021-01-08T10:33:13+00:00 GenBank: Fix normalization and depth differences with original records 2021-01-08T10:33:13+00:00 Pjotr Prins 2021-01-08T10:33:13+00:00 urn:sha1:b112b3203e34ea61dfdf802bce5036f938eaa774 Set JSON indentation 2021-01-08T07:48:14+00:00 Pjotr Prins 2021-01-08T07:48:14+00:00 urn:sha1:5d941e47e27a3cd2c47f8ee51f5523d180f8a5b2 Get correct GenBank ID with version, see #122 2021-01-08T07:34:04+00:00 Pjotr Prins 2021-01-08T07:34:04+00:00 urn:sha1:a9964da4a9efb1b068f80c0b632d0cc7bf923c58 FASTA file should not have leading space 2021-01-08T07:12:49+00:00 Pjotr Prins 2021-01-08T07:12:49+00:00 urn:sha1:97a820f250063d223007d3d8fea5901a1bfac77d Allow for xml and xml.gz files 2021-01-07T09:17:59+00:00 Pjotr Prins 2021-01-07T09:17:47+00:00 urn:sha1:329a1a7e122eda41016185d1b1e8d50d97f8857b cleaned utils.py 2021-01-06T13:13:13+00:00 AndreaGuarracino 2021-01-06T13:13:13+00:00 urn:sha1:27a2b926036211469eccbf8c3d9580182482bdc2 cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.py 2021-01-05T16:56:19+00:00 AndreaGuarracino 2021-01-05T16:56:19+00:00 urn:sha1:911ba372cfc4b35c5b52d18a573a636ea78d16d7 cleaning genbank-fetch-ids.py 2021-01-05T16:35:46+00:00 AndreaGuarracino 2021-01-05T16:35:46+00:00 urn:sha1:f7666a7766c8138aa690340fc68cb67f709327f3 API: fix returned record to include original metadata 2021-01-05T09:34:26+00:00 Pjotr Prins 2021-01-05T09:34:26+00:00 urn:sha1:9d75ce088e6388bf23ae077fd06b2a3f51be1bda mapping: no longer requires specimen file for genbank output 2021-01-04T10:25:36+00:00 Pjotr Prins 2021-01-04T10:25:36+00:00 urn:sha1:f9f27a787fef0ad58c1ae465d8ba1ee4634083ae