bh20-seq-resource/workflows/pangenome-generate, branch master Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=master 2020-11-21T22:11:40+00:00 abPOA works better starting from shorter sequences 2020-11-21T22:11:40+00:00 AndreaGuarracino 2020-11-21T22:11:40+00:00 urn:sha1:bfd830f9d777c456409958030142155043ec1c68 added abPOA workflow; typos 2020-11-21T22:06:05+00:00 AndreaGuarracino 2020-11-21T22:06:05+00:00 urn:sha1:1e9a735e84a8e89099b1de2ec66c56669caf6cc8 added reversed_sorting parameter; typos 2020-11-21T21:00:34+00:00 AndreaGuarracino 2020-11-21T21:00:34+00:00 urn:sha1:862ae0235e3d1b105fa342cedf4aa59ae73d90c4 generalized spoa workflow 2020-11-21T20:21:36+00:00 AndreaGuarracino 2020-11-21T20:21:36+00:00 urn:sha1:3c35250eb6394ec8d0e28e4391ec23f2223345c8 Give from_sparql more keep cache. 2020-11-19T02:25:14+00:00 Peter Amstutz 2020-11-19T02:24:52+00:00 urn:sha1:fd4b04479fb85f01d2cb2e582e9e470296b8b3cf Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Fix typo. Give from_sparql more RAM. 2020-11-18T23:07:04+00:00 Peter Amstutz 2020-11-18T23:07:04+00:00 urn:sha1:0b2ac8667451f9dee7121b2d3d37f8f580e75cfb Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Add query-to-gfa workflow 2020-11-18T22:05:12+00:00 Peter Amstutz 2020-11-18T22:03:01+00:00 urn:sha1:81daa0acc4c4a0827e1c1198f054f4d4dacd1daf Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Make collect-seqs skip bad inputs. 2020-11-11T22:04:11+00:00 Peter Amstutz 2020-11-11T19:53:04+00:00 urn:sha1:85c50a6ae14dab51eb4287404955e0508e2df1b9 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Use arvados uuids for RDF subjects. 2020-11-10T16:52:37+00:00 Peter Amstutz 2020-11-10T16:52:37+00:00 urn:sha1:c01188ec20936462357b317f81567aadc64c8f33 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Make resource link work for both portable data hashes and sample id 2020-11-09T22:20:27+00:00 Peter Amstutz 2020-11-09T22:20:27+00:00 urn:sha1:1082b907d816f5da52aba6233073737632d0242f Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>