bh20-seq-resource/scripts, branch uuid-for-resource Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=uuid-for-resource 2020-11-08T10:50:24+00:00 Uploaded UTHSC sequences 2020-11-08T10:50:24+00:00 Pjotr Prins 2020-11-08T10:50:24+00:00 urn:sha1:b311e2ec0f1d02cf16152855dd8bdd760ed4578b UTHSC samples 2020-11-08T10:35:03+00:00 Pjotr Prins 2020-11-08T10:35:03+00:00 urn:sha1:cb2200839e180d518167bce06395ae04c332ddf4 Add country entries that miss coordinates 2020-11-06T12:58:38+00:00 Pjotr Prins 2020-11-06T12:58:38+00:00 urn:sha1:6c654dd60f98d473ba94fda6143d8b8b00f99586 Country trouble shooting 2020-11-06T12:48:00+00:00 Pjotr Prins 2020-11-06T12:48:00+00:00 urn:sha1:7c74a20b90ca647ca387eff2ed830c22f5ba1282 Countries 2020-11-06T10:31:56+00:00 Pjotr Prins 2020-11-06T10:31:56+00:00 urn:sha1:951ebe949d88cdbfed028e0a2a420ce7921c3919 Using correct wikidata geo link 2020-11-06T10:14:21+00:00 Pjotr Prins 2020-11-06T10:14:21+00:00 urn:sha1:039ad90b1627464b687adddb08cf489dca3c5fbc Adding Tennessee items 2020-11-06T10:13:05+00:00 Pjotr Prins 2020-11-06T10:13:05+00:00 urn:sha1:d75f1c74fbf86652b02520de6ed46c981cf27e50 UTHSC upload info 2020-11-06T09:52:32+00:00 Pjotr Prins 2020-11-06T09:52:32+00:00 urn:sha1:43d7264dda8061a024befbc9ca0a89d7159b1e40 esr_samples script refactoring; added a reference of the esr_samples script in the blog as an example of how to parse metadata 2020-09-29T16:46:49+00:00 AndreaGuarracino 2020-09-29T16:46:49+00:00 urn:sha1:b3a671f04743dc2bf48049b413d7d1f20d31bbcf new countries; updated genbank/sra scripts to manage more specimen sources 2020-09-28T09:57:51+00:00 AndreaGuarracino 2020-09-28T09:57:51+00:00 urn:sha1:c72dab2788d010153d5406f2d5ecbe3824571931