bh20-seq-resource/scripts, branch upload-download-statusTool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysishttp://git.systemreboot.net/bh20-seq-resource/atom?h=upload-download-status2020-07-07T21:27:43+00:00Merge pull request #90 from AndreaGuarracino/patch-212020-07-07T21:27:43+00:00LLTommy2020-07-07T21:27:43+00:00urn:sha1:b994b59963248a301e1248f792f21d9ab2ea8a3f
genbank and sra scripts update, new terms in the ontology dictionariesfix missing authors #912020-07-07T21:01:48+00:00AndreaGuarracino2020-07-07T21:01:48+00:00urn:sha1:f77e86dbb84baf8add3d7a71f8f06fb44a99507bminimap2 returns nothing when there is no alignment.2020-07-07T20:41:11+00:00Peter Amstutz2020-07-07T20:41:11+00:00urn:sha1:54e0ce85ef3abafb8870ef5a9244a03f16b5e3f5if the technology is not found, the YAML file is not created; managed longer species strings2020-07-07T20:07:35+00:00AndreaGuarracino2020-07-07T20:07:35+00:00urn:sha1:9b1457763c08028179b0987d385d1fe879062b64renamed sra script; added seq technology in its additional information field if the term …2020-07-06T13:24:06+00:00AndreaGuarracino2020-07-06T13:24:06+00:00urn:sha1:4e2ac9bdef97175f5d762c6e7f065a83512a3c40fix ncbi_countries dictionary2020-07-06T13:22:45+00:00AndreaGuarracino2020-07-06T13:22:45+00:00urn:sha1:c8b12b4e2b7e2e51315fe738f8bb4e37cb78ae55new terms in the ncbi_countries dictionary2020-07-06T13:09:49+00:00Andrea Guarracino2020-07-06T09:03:31+00:00urn:sha1:92639cf2616e02a798521e61598393d6d1aad5e3added seq technology in its additional information field if the term is missing in the dicts2020-07-06T09:26:44+00:00AndreaGuarracino2020-07-06T09:26:44+00:00urn:sha1:27fd3fd297edbed5e5d29669eb0ad127aec162e8updated SraExperimentPackage info2020-07-06T09:22:12+00:00AndreaGuarracino2020-07-06T09:22:12+00:00urn:sha1:ff426b55cf7e5370d66461218d3bfb6232b882a2two more terms in the ncbi_sequencing_technology dictionary2020-07-06T09:19:46+00:00Andrea Guarracino2020-07-06T09:19:46+00:00urn:sha1:38a5b6d21d6bf631ade1b0875ca654331d50021a