bh20-seq-resource/scripts, branch new_assembly_method_field Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=new_assembly_method_field 2020-09-29T16:46:49+00:00 esr_samples script refactoring; added a reference of the esr_samples script in the blog as an example of how to parse metadata 2020-09-29T16:46:49+00:00 AndreaGuarracino 2020-09-29T16:46:49+00:00 urn:sha1:b3a671f04743dc2bf48049b413d7d1f20d31bbcf new countries; updated genbank/sra scripts to manage more specimen sources 2020-09-28T09:57:51+00:00 AndreaGuarracino 2020-09-28T09:57:51+00:00 urn:sha1:c72dab2788d010153d5406f2d5ecbe3824571931 genbank and sra scripts more picky on the ontologies; added utils.py for shared functions 2020-09-28T07:13:50+00:00 AndreaGuarracino 2020-09-28T07:13:50+00:00 urn:sha1:bc2e51bc8418876cc826482ece10874b2a61fa03 Virtuoso uploader: instructions 2020-09-27T12:55:33+00:00 Pjotr Prins 2020-09-27T12:55:33+00:00 urn:sha1:e64c1084caf9a8fe0ebca1b01d9353533f65f2ee Virtuoso uploader: explicit output 2020-09-27T12:53:22+00:00 Pjotr Prins 2020-09-27T12:53:22+00:00 urn:sha1:7a2ab0791c75ee68373d3615e2ec828d58f741bb Fixing missing dot in .ttl file 2020-09-27T12:35:07+00:00 lltommy 2020-09-27T12:35:07+00:00 urn:sha1:4fc0b9493b5e39a31ca83e15b1c3403b365eb8c1 Adding script supporting semantic enrichment 2020-09-27T10:56:27+00:00 lltommy 2020-09-27T10:56:27+00:00 urn:sha1:71820c89e06b7d028ffdf76ddf01141733c78388 script for processing the metadata of the ESR samples; moved delete_entries_on_arvados script in scripts directory 2020-09-26T10:12:17+00:00 AndreaGuarracino 2020-09-26T10:12:17+00:00 urn:sha1:7c12e4976337a063301be260cb3954bf4303f5e0 added new New Zealand entries 2020-09-25T18:04:12+00:00 AndreaGuarracino 2020-09-25T18:04:12+00:00 urn:sha1:8e9247ab29db30e9bb7c87bef5f127b3b5cec699 fixed bugs in in index management and type conversion 2020-09-04T10:34:54+00:00 AndreaGuarracino 2020-09-04T10:34:54+00:00 urn:sha1:c754aab95f47317228a07ccbe3818780aa22a52a