bh20-seq-resource/scripts/download_genbank_data, branch pangenome_workflow_abpoa Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=pangenome_workflow_abpoa 2020-11-15T13:23:09+00:00 fix sequencing_coverage 2020-11-15T13:23:09+00:00 AndreaGuarracino 2020-11-15T13:23:09+00:00 urn:sha1:d9165d64840daca222305a6bf8d414a77a3cff21 added a check on host_age 2020-11-15T10:36:25+00:00 AndreaGuarracino 2020-11-15T10:36:25+00:00 urn:sha1:72e77fda220e939676d10fd8505fd15517e99702 added a check on host_age 2020-11-14T22:30:53+00:00 AndreaGuarracino 2020-11-14T22:30:53+00:00 urn:sha1:ba8c23625dea3d869eab821007e8f5db2eaf9dfe fix check date sra script 2020-11-13T21:41:47+00:00 AndreaGuarracino 2020-11-13T21:41:47+00:00 urn:sha1:0d7f1bc0000df215e85f0da1143703e311328dea generation of dates a little more robust 2020-11-13T21:29:10+00:00 AndreaGuarracino 2020-11-13T21:29:10+00:00 urn:sha1:cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079 to not create YAML files with date before 2019 December 2020-11-13T21:04:36+00:00 AndreaGuarracino 2020-11-13T21:04:36+00:00 urn:sha1:a5f5a85b9db5e84f3680e85b7116f324fd6d2e2e fix in the ids to consider 2020-11-13T12:39:23+00:00 AndreaGuarracino 2020-11-13T12:39:23+00:00 urn:sha1:764bd98fcfdde9657c520fb9bfcfb775ea9f05c9 added ids-to-consider option to the NCBI script 2020-11-13T11:41:14+00:00 AndreaGuarracino 2020-11-13T11:41:14+00:00 urn:sha1:9674e9582536d52fef8f6dcde6dade07d0c580e7 managed the assembly_method in the scripts, doc, and the example templates 2020-11-12T17:50:13+00:00 AndreaGuarracino 2020-11-12T17:50:13+00:00 urn:sha1:dbd32a3042099d52d30028364ffdadcd0f60ede2 updated alignment_protocol field in the script, doc, and the example templates 2020-11-12T17:35:00+00:00 AndreaGuarracino 2020-11-12T17:35:00+00:00 urn:sha1:87440554e57d5c5ed846e98a3b3ec428330e15e8