bh20-seq-resource/scripts/download_genbank_data, branch master Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=master 2020-12-31T09:58:30+00:00 genbank: moving script into workflow space 2020-12-31T09:58:30+00:00 Pjotr Prins 2020-12-31T09:58:30+00:00 urn:sha1:d1a554001e62cb13da3498296a68092d8bff7824 Ignores 2020-12-30T15:16:48+00:00 Pjotr Prins 2020-12-30T15:16:48+00:00 urn:sha1:b974db8f4e3fcc8bc4af3ade25b9e1bf5fbc37f1 Genbank: comments 2020-12-30T15:14:48+00:00 Pjotr Prins 2020-12-30T15:14:48+00:00 urn:sha1:573e0eb0df5914994dc61b819a3ce14dc8c39398 fix sequencing_coverage 2020-11-15T13:23:09+00:00 AndreaGuarracino 2020-11-15T13:23:09+00:00 urn:sha1:d9165d64840daca222305a6bf8d414a77a3cff21 added a check on host_age 2020-11-15T10:36:25+00:00 AndreaGuarracino 2020-11-15T10:36:25+00:00 urn:sha1:72e77fda220e939676d10fd8505fd15517e99702 added a check on host_age 2020-11-14T22:30:53+00:00 AndreaGuarracino 2020-11-14T22:30:53+00:00 urn:sha1:ba8c23625dea3d869eab821007e8f5db2eaf9dfe fix check date sra script 2020-11-13T21:41:47+00:00 AndreaGuarracino 2020-11-13T21:41:47+00:00 urn:sha1:0d7f1bc0000df215e85f0da1143703e311328dea generation of dates a little more robust 2020-11-13T21:29:10+00:00 AndreaGuarracino 2020-11-13T21:29:10+00:00 urn:sha1:cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079 to not create YAML files with date before 2019 December 2020-11-13T21:04:36+00:00 AndreaGuarracino 2020-11-13T21:04:36+00:00 urn:sha1:a5f5a85b9db5e84f3680e85b7116f324fd6d2e2e fix in the ids to consider 2020-11-13T12:39:23+00:00 AndreaGuarracino 2020-11-13T12:39:23+00:00 urn:sha1:764bd98fcfdde9657c520fb9bfcfb775ea9f05c9