bh20-seq-resource/scripts/download_genbank_data, branch analysis-refactor Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=analysis-refactor 2020-07-12T13:58:29+00:00 added a suffix to distinguish which script created the error/warning files 2020-07-12T13:58:29+00:00 AndreaGuarracino 2020-07-12T13:58:29+00:00 urn:sha1:bb90f06da570624952d4b7001ee37fc7018e3a7d an output file is created with the accessions for which no YAML file is created 2020-07-10T11:55:49+00:00 AndreaGuarracino 2020-07-10T11:55:49+00:00 urn:sha1:8cb542fdf60273aec7ec107f8bc4896375381263 fixed bug that lead to invalid sample_sequencing_technology values 2020-07-08T22:39:48+00:00 Andrea Guarracino 2020-07-08T22:39:48+00:00 urn:sha1:6207501c9b504936a61f232d33344e04350b0aed fix missing authors #91 2020-07-07T21:01:48+00:00 AndreaGuarracino 2020-07-07T21:01:48+00:00 urn:sha1:f77e86dbb84baf8add3d7a71f8f06fb44a99507b if the technology is not found, the YAML file is not created; managed longer species strings 2020-07-07T20:07:35+00:00 AndreaGuarracino 2020-07-07T20:07:35+00:00 urn:sha1:9b1457763c08028179b0987d385d1fe879062b64 added seq technology in its additional information field if the term is missing in the dicts 2020-07-06T09:26:44+00:00 AndreaGuarracino 2020-07-06T09:26:44+00:00 urn:sha1:27fd3fd297edbed5e5d29669eb0ad127aec162e8 Improving genbank import workflow 2020-07-03T20:47:14+00:00 Peter Amstutz 2020-07-03T20:45:17+00:00 urn:sha1:535b8017ddd27a9db683f6d29368258b5c48cf5a moved the genbank script in his specific directory 2020-06-22T21:27:19+00:00 AndreaGuarracino 2020-06-22T21:27:19+00:00 urn:sha1:75ad6744aa8edb7de92a427c55405d9331879ad4