bh20-seq-resource/scripts/dict_ontology_standardization, branch upload-download-status Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=upload-download-status 2020-07-07T20:07:35+00:00 if the technology is not found, the YAML file is not created; managed longer species strings 2020-07-07T20:07:35+00:00 AndreaGuarracino 2020-07-07T20:07:35+00:00 urn:sha1:9b1457763c08028179b0987d385d1fe879062b64 fix ncbi_countries dictionary 2020-07-06T13:22:45+00:00 AndreaGuarracino 2020-07-06T13:22:45+00:00 urn:sha1:c8b12b4e2b7e2e51315fe738f8bb4e37cb78ae55 new terms in the ncbi_countries dictionary 2020-07-06T13:09:49+00:00 Andrea Guarracino 2020-07-06T09:03:31+00:00 urn:sha1:92639cf2616e02a798521e61598393d6d1aad5e3 two more terms in the ncbi_sequencing_technology dictionary 2020-07-06T09:19:46+00:00 Andrea Guarracino 2020-07-06T09:19:46+00:00 urn:sha1:38a5b6d21d6bf631ade1b0875ca654331d50021a new terms in the sequencing_technology dictionary 2020-07-06T08:19:50+00:00 Andrea Guarracino 2020-07-06T08:19:50+00:00 urn:sha1:1a1ba7504eff79bac6f8d7054abd418b734ae69c added new dictionary entries 2020-06-22T21:23:03+00:00 AndreaGuarracino 2020-06-22T21:23:03+00:00 urn:sha1:5bd991fe5f048b2c4b2c23c6149c1bd789d3bdbc new entries for the EBI samples 2020-06-22T17:10:41+00:00 AndreaGuarracino 2020-06-22T17:10:41+00:00 urn:sha1:54f26d7caa38e55475609bd18ad2ea596c681262 corrected the wrong entities 2020-06-22T16:29:19+00:00 Andrea Guarracino 2020-06-22T16:29:19+00:00 urn:sha1:3eb9981e2c85dd5a3a63b7c291e355a25a3c5a50 http instead of https entity instead of wiki species dictionary 2020-06-12T20:37:27+00:00 Andrea Guarracino 2020-06-12T20:37:27+00:00 urn:sha1:f3d27f234b008a1faaeea428f5bd935ea3a438d2 the script is more verbose; added other countries 2020-06-07T15:41:08+00:00 AndreaGuarracino 2020-06-07T15:41:08+00:00 urn:sha1:e1447dedb1a2a1a03957e56c812acdedf47d43fb