bh20-seq-resource/scripts/dict_ontology_standardization, branch new_assembly_method_field Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=new_assembly_method_field 2020-09-29T16:46:49+00:00 esr_samples script refactoring; added a reference of the esr_samples script in the blog as an example of how to parse metadata 2020-09-29T16:46:49+00:00 AndreaGuarracino 2020-09-29T16:46:49+00:00 urn:sha1:b3a671f04743dc2bf48049b413d7d1f20d31bbcf new countries; updated genbank/sra scripts to manage more specimen sources 2020-09-28T09:57:51+00:00 AndreaGuarracino 2020-09-28T09:57:51+00:00 urn:sha1:c72dab2788d010153d5406f2d5ecbe3824571931 added new New Zealand entries 2020-09-25T18:04:12+00:00 AndreaGuarracino 2020-09-25T18:04:12+00:00 urn:sha1:8e9247ab29db30e9bb7c87bef5f127b3b5cec699 sra script updated for managing more locations 2020-09-04T08:37:35+00:00 AndreaGuarracino 2020-09-04T08:37:35+00:00 urn:sha1:1430c62ff9245bfecb1d41cc87bbafafcfc81ca3 fixed few countries ontology terms; added a new species 2020-08-28T22:23:51+00:00 AndreaGuarracino 2020-08-28T22:23:51+00:00 urn:sha1:7067de8cfe0607fcae13360b80a3763b86f9664c fixed protocol for the dictionary entries that caused validation problems 2020-08-24T21:32:36+00:00 AndreaGuarracino 2020-08-24T21:32:36+00:00 urn:sha1:5c44403e4516b6c809ecde1398b306bbde2c6727 added new countries and speciesman sources: fixed few country entries 2020-08-23T09:18:48+00:00 AndreaGuarracino 2020-08-23T09:18:48+00:00 urn:sha1:634e266777c7a2e67a4e998845061e250615675a lots of new dictionary terms 2020-08-22T14:39:51+00:00 AndreaGuarracino 2020-08-22T14:39:51+00:00 urn:sha1:19c8d1390707c59f6acc26d23c78d462e4085a7b other term for Homo sapiens (for SRA samples) 2020-07-10T09:50:06+00:00 Andrea Guarracino 2020-07-10T09:50:06+00:00 urn:sha1:87e634040767373309fd7eb99784de0537f72059 if the technology is not found, the YAML file is not created; managed longer species strings 2020-07-07T20:07:35+00:00 AndreaGuarracino 2020-07-07T20:07:35+00:00 urn:sha1:9b1457763c08028179b0987d385d1fe879062b64