bh20-seq-resource/scripts/create_sra_metadata, branch yamlfa2ttl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=yamlfa2ttl 2020-11-21T22:06:05+00:00 added abPOA workflow; typos 2020-11-21T22:06:05+00:00 AndreaGuarracino 2020-11-21T22:06:05+00:00 urn:sha1:1e9a735e84a8e89099b1de2ec66c56669caf6cc8 fixed typos in the integer cast 2020-11-15T10:49:12+00:00 AndreaGuarracino 2020-11-15T10:49:12+00:00 urn:sha1:7fc06d04a04a1737ae8b52f2e08c6698a8e5c721 added a check on host_age 2020-11-15T10:36:25+00:00 AndreaGuarracino 2020-11-15T10:36:25+00:00 urn:sha1:72e77fda220e939676d10fd8505fd15517e99702 added a check on host_age 2020-11-14T22:30:53+00:00 AndreaGuarracino 2020-11-14T22:30:53+00:00 urn:sha1:ba8c23625dea3d869eab821007e8f5db2eaf9dfe check empty strings 2020-11-14T20:44:32+00:00 AndreaGuarracino 2020-11-14T20:44:32+00:00 urn:sha1:c5cc4e975e0d3a2ea1f296b63fdfddeddfd793ec fix check date sra script 2020-11-13T21:41:47+00:00 AndreaGuarracino 2020-11-13T21:41:47+00:00 urn:sha1:0d7f1bc0000df215e85f0da1143703e311328dea generation of dates a little more robust 2020-11-13T21:29:10+00:00 AndreaGuarracino 2020-11-13T21:29:10+00:00 urn:sha1:cb94ded3ea7d28a81ab41fc88ffd291bc0f8c079 to not create YAML files with date before 2019 December 2020-11-13T21:04:36+00:00 AndreaGuarracino 2020-11-13T21:04:36+00:00 urn:sha1:a5f5a85b9db5e84f3680e85b7116f324fd6d2e2e managed the assembly_method in the scripts, doc, and the example templates 2020-11-12T17:50:13+00:00 AndreaGuarracino 2020-11-12T17:50:13+00:00 urn:sha1:dbd32a3042099d52d30028364ffdadcd0f60ede2 create_sra_metadata script doesn't trick the quality control about missing date aymore 2020-11-11T10:43:50+00:00 AndreaGuarracino 2020-11-11T10:43:50+00:00 urn:sha1:8d3e9971edebcf6ae3ef80cddf2fe2142c628875