bh20-seq-resource/scripts/create_sra_metadata, branch uuid-for-resource Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=uuid-for-resource 2020-09-28T09:57:51+00:00 new countries; updated genbank/sra scripts to manage more specimen sources 2020-09-28T09:57:51+00:00 AndreaGuarracino 2020-09-28T09:57:51+00:00 urn:sha1:c72dab2788d010153d5406f2d5ecbe3824571931 genbank and sra scripts more picky on the ontologies; added utils.py for shared functions 2020-09-28T07:13:50+00:00 AndreaGuarracino 2020-09-28T07:13:50+00:00 urn:sha1:bc2e51bc8418876cc826482ece10874b2a61fa03 fixed bugs in in index management and type conversion 2020-09-04T10:34:54+00:00 AndreaGuarracino 2020-09-04T10:34:54+00:00 urn:sha1:c754aab95f47317228a07ccbe3818780aa22a52a sra script re-enabled, ready for tests 2020-09-04T09:34:38+00:00 AndreaGuarracino 2020-09-04T09:34:38+00:00 urn:sha1:8417375cd86c6ba2f29511964544a267ed883ccd added in the sra script an option to include only a subset of ids 2020-09-04T09:13:25+00:00 AndreaGuarracino 2020-09-04T09:13:25+00:00 urn:sha1:327b6db4e7c9ceda190617f2a793e6a646bb30cc sra script updated for managing more locations 2020-09-04T08:37:35+00:00 AndreaGuarracino 2020-09-04T08:37:35+00:00 urn:sha1:1430c62ff9245bfecb1d41cc87bbafafcfc81ca3 synchronized the create_sra_metadata.py script with the latest updates 2020-09-04T07:59:47+00:00 AndreaGuarracino 2020-09-04T07:59:47+00:00 urn:sha1:842f1a25cc2632771e8a816dbb4898db81d7a6c2 genbank/sra scripts update to be more generic with the specimen sources 2020-08-23T09:28:02+00:00 AndreaGuarracino 2020-08-23T09:28:02+00:00 urn:sha1:3b9423891c4e90499a40c1be029ef40160efb557 genbank/sra scripts updated to read the dictionaries in a more general way 2020-08-22T14:41:02+00:00 AndreaGuarracino 2020-08-22T14:41:02+00:00 urn:sha1:d6559a65865ebbb14e041893c2dae742fa146143 added a suffix to distinguish which script created the error/warning files 2020-07-12T13:58:29+00:00 AndreaGuarracino 2020-07-12T13:58:29+00:00 urn:sha1:bb90f06da570624952d4b7001ee37fc7018e3a7d