bh20-seq-resource/scripts/create_sra_metadata, branch analysis-refactor Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=analysis-refactor 2020-07-12T13:58:29+00:00 added a suffix to distinguish which script created the error/warning files 2020-07-12T13:58:29+00:00 AndreaGuarracino 2020-07-12T13:58:29+00:00 urn:sha1:bb90f06da570624952d4b7001ee37fc7018e3a7d metadata with missing host_species are not created 2020-07-10T13:39:02+00:00 AndreaGuarracino 2020-07-10T13:39:02+00:00 urn:sha1:2eab71a70b8630649303a9319e1baf9fa06f8ab4 an output file is created with the accessions for which no YAML file is created 2020-07-10T11:55:49+00:00 AndreaGuarracino 2020-07-10T11:55:49+00:00 urn:sha1:8cb542fdf60273aec7ec107f8bc4896375381263 updated metadata source 2020-07-10T11:43:59+00:00 AndreaGuarracino 2020-07-10T11:43:59+00:00 urn:sha1:1655762b516804dad3d71538e95d97d74653c3e9 if the technology is not found, the YAML file is not created; managed longer species strings 2020-07-07T20:07:35+00:00 AndreaGuarracino 2020-07-07T20:07:35+00:00 urn:sha1:9b1457763c08028179b0987d385d1fe879062b64 renamed sra script; added seq technology in its additional information field if the term … 2020-07-06T13:24:06+00:00 AndreaGuarracino 2020-07-06T13:24:06+00:00 urn:sha1:4e2ac9bdef97175f5d762c6e7f065a83512a3c40