bh20-seq-resource/bh20simplewebuploader, branch upload-download-status Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=upload-download-status 2020-07-08T20:16:42+00:00 Add --revalidate and fix checking/updating properties. 2020-07-08T20:16:42+00:00 Peter Amstutz 2020-07-08T20:16:42+00:00 urn:sha1:cd25f56f4d9aea1d30cc17ee923a6d8dd6c63e5a Get count from arvados 2020-07-08T19:18:00+00:00 Peter Amstutz 2020-07-08T18:02:11+00:00 urn:sha1:cbb191cb23f4e40b1a1d3024401960939fda9bc3 Separate pending/rejected tables "Lastest results" is latest successful run. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Fetch status as anonymous user 2020-07-08T19:18:00+00:00 Peter Amstutz 2020-07-08T14:28:28+00:00 urn:sha1:44e3c21ba89aa19c066148fdd18745f45e168d50 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Split upload tab. Add upload status tab. 2020-07-08T19:18:00+00:00 Peter Amstutz 2020-07-08T04:16:23+00:00 urn:sha1:99af299197dfc527155cd3257388b784810518c4 Add more direct links on download page. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Update form.html 2020-07-03T06:37:52+00:00 Philippe Rocca-Serra 2020-07-03T06:37:52+00:00 urn:sha1:1f5d23bdad892d41a1fc4f243f7fdcfb15e1517c s/onthology/ontology/ fix(map): update fasta count key 2020-06-18T13:00:56+00:00 BonfaceKilz 2020-06-18T13:00:56+00:00 urn:sha1:a56475f2b869962dcf7bbad276db1553fef203ab fix: show missing markers 2020-06-18T12:54:40+00:00 BonfaceKilz 2020-06-18T12:54:40+00:00 urn:sha1:f062b82f4e01523c95d47bc6f4182555e27ed213 The SPARQL query returns "-85.58 44.34" instead of "Point(-85.58 44.34)", so the markers could not be displayed Slighlty alter SPARQL query to truley sumarize locations for contients. Most likley this number must be combined with what is assigned directly to a country? (instead of e.g.) a city? 2020-06-17T17:49:29+00:00 lltommy 2020-06-17T17:49:29+00:00 urn:sha1:e5daaefe32379a22abfd332ee3ba7c139efb8458 Merge pull request #83 from BonfaceKilz/feature/display-content-sequences 2020-06-17T17:22:24+00:00 LLTommy 2020-06-17T17:22:24+00:00 urn:sha1:ae6b95d8e3053e9a446702d77e7ad56a321acda7 Feature/display fasta count on a map Add cluster marker group 2020-06-17T15:54:58+00:00 BonfaceKilz 2020-06-17T15:54:58+00:00 urn:sha1:a80646c6d6f2d768f63db2545f7e1542ea290f77 When markers are close together, lump them together. Also, it provides a convenient method of remove markers when loading other GPS co-ordinates