bh20-seq-resource/bh20sequploader, branch generate-cwl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=generate-cwl 2020-11-13T20:53:46+00:00 there can be two specimen terms 2020-11-13T20:53:46+00:00 AndreaGuarracino 2020-11-13T20:53:46+00:00 urn:sha1:852fbbd14a174addcfe729ab2b54e556228984a4 Yaml and ShEx changes 2020-11-13T17:27:36+00:00 lltommy 2020-11-13T17:27:36+00:00 urn:sha1:87ec8e1d6c5b3ca5375afd4a114f73fad3aa0b68 added closed shapes 2020-11-12T22:03:27+00:00 AndreaGuarracino 2020-11-12T22:03:27+00:00 urn:sha1:133cc8b283cd3f27b1bae3863a48e4e351c30f82 added missing _type: "@id" to the assembly_method field in the schema 2020-11-12T21:51:14+00:00 AndreaGuarracino 2020-11-12T21:51:14+00:00 urn:sha1:eaab30ea672b9e9d24ca4e74910fd7156b8ffcfa Trying to fix the submitter shape, shex and yaml 2020-11-12T13:55:33+00:00 lltommy 2020-11-12T13:55:33+00:00 urn:sha1:0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 Proposed new technology shape/yaml structure 2020-11-12T13:22:08+00:00 lltommy 2020-11-12T13:22:08+00:00 urn:sha1:1b5df01d2047ab5c591f2e0400a5c46cb2dc86ea Support uploading new metadata only 2020-11-11T22:38:47+00:00 Peter Amstutz 2020-11-11T22:38:16+00:00 urn:sha1:2cb5faa2b088cf36c8c41633db137fc020a34529 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Documenting and QC of YAML. Some conflicts discovered that need review 2020-11-11T21:30:51+00:00 lltommy 2020-11-11T21:30:51+00:00 urn:sha1:391e73f5d71baceb35db973dba335dd362a73cbd Merge branch 'master' of https://github.com/arvados/bh20-seq-resource 2020-11-11T08:56:12+00:00 lltommy 2020-11-11T08:56:12+00:00 urn:sha1:d6aa323b6fc7a82e45cc1df51fc72c2d547146eb restricting specimen_source to obo:NCIT which would have prevented the ncbi taxon bug 2020-11-11T08:54:56+00:00 lltommy 2020-11-11T08:54:56+00:00 urn:sha1:c5fe5de7e4c77bfb48b1ae2f662c2d9cc120c06e