bh20-seq-resource/bh20sequploader, branch fasta-subset-from-query Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=fasta-subset-from-query 2020-11-07T10:06:30+00:00 RDF: use URIs 2020-11-07T10:06:30+00:00 Pjotr Prins 2020-11-07T10:06:30+00:00 urn:sha1:9709eca5c76aabe823ba34d976c5d11a9d150b76 Fixed the License error (https!!) 2020-11-07T09:04:03+00:00 Pjotr Prins 2020-11-07T09:04:03+00:00 urn:sha1:0a2d9ef27d6c1b768873252287c6d967cf912025 Uploader script improvements 2020-11-06T11:19:28+00:00 Pjotr Prins 2020-11-06T11:19:28+00:00 urn:sha1:5fdfece97fb2d50a10eab5004a6467ec0097ece8 fixed sequence_assembly_method field description 2020-11-04T15:11:37+00:00 AndreaGuarracino 2020-11-04T15:11:37+00:00 urn:sha1:f616b4200a5a72c0c9cd0ee911d5048b67cdcca2 Commented in uploader main.py 2020-10-27T12:17:41+00:00 Pjotr Prins 2020-10-27T12:17:41+00:00 urn:sha1:b6f05c9f46a88b6f8153c3f60b6dd26e383307b4 sequence divergence to 5% for minimap2 in the FASTA quality control 2020-10-01T20:44:53+00:00 AndreaGuarracino 2020-10-01T20:44:53+00:00 urn:sha1:d60b6c7298e62fdc676e722cdfbaecf144536f2e show more information in the error messages 2020-10-01T20:36:44+00:00 AndreaGuarracino 2020-10-01T20:36:44+00:00 urn:sha1:cc9aff0931aa1579c47c01dfa74022807548b40f fixed bugs in in index management and type conversion 2020-09-04T10:34:54+00:00 AndreaGuarracino 2020-09-04T10:34:54+00:00 urn:sha1:c754aab95f47317228a07ccbe3818780aa22a52a local QC is optional 2020-08-28T09:20:22+00:00 AndreaGuarracino 2020-08-28T09:20:22+00:00 urn:sha1:8f1819dc9b7ace9727d396d6b89f79b3b41165f8 added control (locally and in the validation) that sample_id has to be the same in the metadata and in the FASTA header #103 2020-08-28T09:16:24+00:00 AndreaGuarracino 2020-08-28T09:16:24+00:00 urn:sha1:3165a31e321cbf4641f9afdcbea511ee66f673bb