bh20-seq-resource, branch uuid-for-resource

Use arvados uuids for RDF subjects.

2020-11-10T16:52:37+00:00

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Merge pull request #105 from arvados/fasta-subset-from-query

2020-11-09T22:32:05+00:00

Extract subset of the all-sequences fasta by running a sparql query. Also includes some tweaks to the permalinks.

Extract PDH from result and construct URIs from that

2020-11-09T22:30:16+00:00

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Make resource link work for both portable data hashes and sample id

2020-11-09T22:20:27+00:00

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Make it so "pangenome analysis" only runs collect-seqs.

2020-11-09T21:55:33+00:00

Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Rename schema param to metadataSchema

2020-11-09T21:45:33+00:00

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Extract subset of the all-sequences fasta by running a sparql query.

2020-11-09T21:45:33+00:00

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz

Uploaded UTHSC sequences

2020-11-08T10:50:24+00:00

UTHSC samples

2020-11-08T10:35:03+00:00

Tests: added SPARQL test

2020-11-07T10:31:27+00:00