bh20-seq-resource, branch generate-cwl Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=generate-cwl 2021-03-17T18:28:08+00:00 Use default output of pipeline 2021-03-17T18:28:08+00:00 Arun Isaac 2021-03-17T18:28:08+00:00 urn:sha1:82336f79f04ccf37849f7ef1814f60fb85f3a738 Do not specify outputs to be of File type. 2021-03-17T11:39:35+00:00 Arun Isaac 2021-03-17T11:39:35+00:00 urn:sha1:f8a9462c56b481d34af5d142fb746974c7d7bc5c Do not specify inputs to be of File type. 2021-03-17T11:36:36+00:00 Arun Isaac 2021-03-17T11:36:36+00:00 urn:sha1:c43a223cf50b6aa88bbeb335f995ac96606482f7 Rewrite fastq2fasta.scm using new ccwl API 2021-03-06T22:30:51+00:00 Arun Isaac 2021-03-06T22:30:51+00:00 urn:sha1:3050817d690f200076964b620064f93c9bd48d3a Implement bowtie, bwa-mem variant calling in ccwl 2021-03-06T22:25:54+00:00 Arun Isaac 2021-03-06T22:25:54+00:00 urn:sha1:68f8201eb21d9acfbf4a6853da19b374b4dec10c Rewrite fastq2fasta workflow using clitool-step 2021-02-25T09:22:58+00:00 Arun Isaac 2021-02-25T09:21:11+00:00 urn:sha1:db577d11808d91ff5c0b3643a37b5ce9765afc78 Move generate-cwl to its own repository 2021-02-25T09:22:52+00:00 Arun Isaac 2021-02-25T08:40:50+00:00 urn:sha1:950898df6928c0cdec4f40238eb4da4ec6901bde Implement fastq2fasta workflows in scheme 2021-02-21T14:15:49+00:00 Arun Isaac 2021-02-21T14:15:49+00:00 urn:sha1:85c63fecd1eb20aebb7ec8ce3137af253619b01b Add CWL generator for Workflow workflows 2021-02-21T14:15:30+00:00 Arun Isaac 2021-02-21T14:14:54+00:00 urn:sha1:2ed13ca5e4c779b59d04e574a496b6cb69bcba44 Add CWL generator for CommandLineTool workflows 2021-02-21T14:15:30+00:00 Arun Isaac 2021-02-21T14:13:16+00:00 urn:sha1:364cd0a987c2a6644ceb2803f92c01d16356d7a1