bh20-seq-resource, branch analysis-refactor Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis http://git.systemreboot.net/bh20-seq-resource/atom?h=analysis-refactor 2020-07-16T20:27:48+00:00 Add "validated" and "running workflows" tables to status 2020-07-16T20:27:48+00:00 Peter Amstutz 2020-07-16T20:27:32+00:00 urn:sha1:d49f6b5e11a41a51cb257bbafdcba410544f8486 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Improve uploader reporting. 2020-07-16T18:48:22+00:00 Peter Amstutz 2020-07-16T18:48:22+00:00 urn:sha1:d34374f0e822edd1539ea5de6f8522f2b761de3f Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Cleanup script also clears errors for revalidate 2020-07-16T18:28:02+00:00 Peter Amstutz 2020-07-16T18:28:02+00:00 urn:sha1:474d15e17be63046a091615e89ba63adecdb109b Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Improve upload form layout. 2020-07-16T18:21:40+00:00 Peter Amstutz 2020-07-16T18:21:40+00:00 urn:sha1:15624e038e0f368d2be4c9a76ace77da4d673fdd Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Catch exceptions 2020-07-16T16:33:07+00:00 Peter Amstutz 2020-07-16T16:32:43+00:00 urn:sha1:6bfefe984a84fb215d61e045c49a4ab123bb7339 Add script to cleanup bad uploads. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Make license optional 2020-07-16T16:04:26+00:00 Peter Amstutz 2020-07-16T16:04:26+00:00 urn:sha1:0e84b18cb134855d572d1f94d5d3c43571afe7e9 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Make license optional for now 2020-07-16T16:01:38+00:00 Peter Amstutz 2020-07-16T16:01:38+00:00 urn:sha1:a10569f51072569604b2384e6e4d583b36de73c4 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Refactor analysis code into a class 2020-07-16T15:48:35+00:00 Peter Amstutz 2020-07-16T15:48:35+00:00 urn:sha1:53ff8af0843942d83dff9fd5b95d1ae98e80fe27 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Add edit link for download page 2020-07-16T10:01:08+00:00 Pjotr Prins 2020-07-16T10:01:08+00:00 urn:sha1:8d995b271f20d15b2b6a7845ade22c396a383da3 Add edit icon to text on github 2020-07-16T09:53:19+00:00 Pjotr Prins 2020-07-16T09:53:19+00:00 urn:sha1:f0dd283c31acfcc34b967b7a81167e0543d06364 Closes #76